Schema Example Implementations

The examples below show a direct read to of a "metadata-rich" array map sample, rendered in the native schema and according to a "best match" remapping using existing or previously discussed GA4GH attributes.

arrayMap JSONSort GA4GH transitional JSONSort
{
   "data" : [
      {
         "NCIT:TERM" : "Medulloblastoma",
         "ICDMORPHOLOGYCODE" : "9470/3",
         "_id" : {
            "$oid" : "55e363bd0e2a1dce1c82d986"
         },
         "DIAGNOSISTEXT" : "medulloblstoma [classic]",
         "SERIESID" : "PMID18769486",
         "PMID" : "18769486",
         "NCIT:CODE" : "C3222",
         "PLATFORMID" : "",
         "TNM" : "M0",
         "SEX" : "male",
         "FOLLOWUP" : 85,
         "DEATH" : 0,
         "ICDMORPHOLOGY" : "Medulloblastoma, NOS",
         "CLINICALGROUP" : "CNS: medulloblastomas",
         "STATUS" : "in Progenetix from article data",
         "ICDTOPOGRAPHY" : "cerebellum",
         "BIOSAMPLEID" : "AM_BS__18769486_MB0262",
         "AGE" : 14,
         "UID" : "18769486_MB0262",
         "ICDTOPOGRAPHYCODE" : "C71.6",
         "ARRAYID" : "18769486_MB0262"
      }
   ],
   "api_params" : {
      "count" : 1,
      "db" : "arraymap",
      "genome" : "GRCh38",
      "call" : "api_doctype=jsonprettyplain&api_out=samples&db=arraymap&uid_m=18769486_MB0262",
      "scope" : "samples",
      "datatype" : "sampledata"
   }
}

        Error: Unsupported content type: image/svg+xml (Must be =text/html=, =text/plain= or =text/css=) 
Topic revision: r5 - 09 Mar 2016, MichaelBaudis
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